使用这个类。

public static class Extensions
{
    public static void CopyTo(this DirectoryInfo source, DirectoryInfo target, bool overwiteFiles = true)
    {
        if (!source.Exists) return;
        if (!target.Exists) target.Create();

        Parallel.ForEach(source.GetDirectories(), (sourceChildDirectory) => 
            CopyTo(sourceChildDirectory, new DirectoryInfo(Path.Combine(target.FullName, sourceChildDirectory.Name))));

        foreach (var sourceFile in source.GetFiles())
            sourceFile.CopyTo(Path.Combine(target.FullName, sourceFile.Name), overwiteFiles);
    }
    public static void CopyTo(this DirectoryInfo source, string target, bool overwiteFiles = true)
    {
        CopyTo(source, new DirectoryInfo(target), overwiteFiles);
    }
}

复制并替换文件夹中的所有文件

        public static void CopyAndReplaceAll(string SourcePath, string DestinationPath, string backupPath)
    {
            foreach (string dirPath in Directory.GetDirectories(SourcePath, "*", SearchOption.AllDirectories))
            {
                Directory.CreateDirectory($"{DestinationPath}{dirPath.Remove(0, SourcePath.Length)}");
                Directory.CreateDirectory($"{backupPath}{dirPath.Remove(0, SourcePath.Length)}");
            }
            foreach (string newPath in Directory.GetFiles(SourcePath, "*.*", SearchOption.AllDirectories))
            {
                if (!File.Exists($"{ DestinationPath}{newPath.Remove(0, SourcePath.Length)}"))
                    File.Copy(newPath, $"{ DestinationPath}{newPath.Remove(0, SourcePath.Length)}");
                else
                    File.Replace(newPath
                        , $"{ DestinationPath}{newPath.Remove(0, SourcePath.Length)}"
                        , $"{ backupPath}{newPath.Remove(0, SourcePath.Length)}", false);
            }
    }

一个只有一个循环复制所有文件夹和文件的变体:

foreach (var f in Directory.GetFileSystemEntries(path, "*", SearchOption.AllDirectories))
{
    var output = Regex.Replace(f, @"^" + path, newPath);
    if (File.Exists(f)) File.Copy(f, output, true);
    else Directory.CreateDirectory(output);
}

递归复制文件夹而不递归，以避免堆栈溢出。

public static void CopyDirectory(string source, string target)
{
    var stack = new Stack<Folders>();
    stack.Push(new Folders(source, target));

    while (stack.Count > 0)
    {
        var folders = stack.Pop();
        Directory.CreateDirectory(folders.Target);
        foreach (var file in Directory.GetFiles(folders.Source, "*.*"))
        {
            File.Copy(file, Path.Combine(folders.Target, Path.GetFileName(file)));
        }

        foreach (var folder in Directory.GetDirectories(folders.Source))
        {
            stack.Push(new Folders(folder, Path.Combine(folders.Target, Path.GetFileName(folder))));
        }
    }
}

public class Folders
{
    public string Source { get; private set; }
    public string Target { get; private set; }

    public Folders(string source, string target)
    {
        Source = source;
        Target = target;
    }
}

抱歉之前的代码，它仍然有bug:((成为最快枪问题的猎物)。这里是测试和工作。键是SearchOption。AllDirectories，这消除了显式递归的需要。

string path = "C:\\a";
string[] dirs = Directory.GetDirectories(path, "*.*", SearchOption.AllDirectories);
string newpath = "C:\\x";
try
{
    Directory.CreateDirectory(newpath);
}
catch (IOException ex)
{
    Console.WriteLine(ex.Message);
}
for (int j = 0; j < dirs.Length; j++)
{
    try
    {
        Directory.CreateDirectory(dirs[j].Replace(path, newpath));
    }
    catch (IOException ex)
    {
        Console.WriteLine(ex.Message);
    }
}

string[] files = Directory.GetFiles(path, "*.*", SearchOption.AllDirectories);
for (int j = 0; j < files.Length; j++)            
{
    try
    {
        File.Copy(files[j], files[j].Replace(path, newpath));
    }
    catch (IOException ex)
    {
        Console.WriteLine(ex.Message);
    }
}

我的解决方案基本上是对@Termininja的答案的修改，但我增强了一点，它似乎比公认的答案快5倍以上。

public static void CopyEntireDirectory(string path, string newPath)
{
    Parallel.ForEach(Directory.GetFileSystemEntries(path, "*", SearchOption.AllDirectories)
    ,(fileName) =>
    {
        string output = Regex.Replace(fileName, "^" + Regex.Escape(path), newPath);
        if (File.Exists(fileName))
        {
            Directory.CreateDirectory(Path.GetDirectoryName(output));
            File.Copy(fileName, output, true);
        }
        else
            Directory.CreateDirectory(output);
    });
}

编辑:将@Ahmed Sabry修改为完全并行foreach确实会产生更好的结果，但是代码使用递归函数，在某些情况下并不理想。

public static void CopyEntireDirectory(DirectoryInfo source, DirectoryInfo target, bool overwiteFiles = true)
{
    if (!source.Exists) return;
    if (!target.Exists) target.Create();

    Parallel.ForEach(source.GetDirectories(), (sourceChildDirectory) =>
        CopyEntireDirectory(sourceChildDirectory, new DirectoryInfo(Path.Combine(target.FullName, sourceChildDirectory.Name))));

    Parallel.ForEach(source.GetFiles(), sourceFile =>
        sourceFile.CopyTo(Path.Combine(target.FullName, sourceFile.Name), overwiteFiles));
}