Python中是否有SciPy函数或NumPy函数或模块来计算给定特定窗口的1D数组的运行平均值?


当前回答

出于教学目的,让我再添加两个Numpy解决方案(比cumsum解决方案慢):

import numpy as np
from numpy.lib.stride_tricks import as_strided

def ra_strides(arr, window):
    ''' Running average using as_strided'''
    n = arr.shape[0] - window + 1
    arr_strided = as_strided(arr, shape=[n, window], strides=2*arr.strides)
    return arr_strided.mean(axis=1)

def ra_add(arr, window):
    ''' Running average using add.reduceat'''
    n = arr.shape[0] - window + 1
    indices = np.array([0, window]*n) + np.repeat(np.arange(n), 2)
    arr = np.append(arr, 0)
    return np.add.reduceat(arr, indices )[::2]/window

使用的函数:as_strided, add.reduceat

其他回答

如果你必须为非常小的数组(少于200个元素)重复这样做,我发现只用线性代数就能得到最快的结果。 最慢的部分是建立你的乘法矩阵y,你只需要做一次,但之后可能会更快。

import numpy as np
import random 

N = 100      # window size
size =200     # array length

x = np.random.random(size)
y = np.eye(size, dtype=float)

# prepare matrix
for i in range(size):
  y[i,i:i+N] = 1./N
  
# calculate running mean
z = np.inner(x,y.T)[N-1:]

有关现成的解决方案,请参见https://scipy-cookbook.readthedocs.io/items/SignalSmooth.html。 它提供了平窗类型的运行平均值。请注意,这比简单的do-it-yourself卷积方法要复杂一些,因为它试图通过反射数据来处理数据开头和结尾的问题(在您的情况下可能有效,也可能无效……)。

首先,你可以试着:

a = np.random.random(100)
plt.plot(a)
b = smooth(a, window='flat')
plt.plot(b)

虽然这里有这个问题的解决方案,但请看看我的解决方案。这是非常简单和工作良好。

import numpy as np
dataset = np.asarray([1, 2, 3, 4, 5, 6, 7])
ma = list()
window = 3
for t in range(0, len(dataset)):
    if t+window <= len(dataset):
        indices = range(t, t+window)
        ma.append(np.average(np.take(dataset, indices)))
else:
    ma = np.asarray(ma)

出于教学目的,让我再添加两个Numpy解决方案(比cumsum解决方案慢):

import numpy as np
from numpy.lib.stride_tricks import as_strided

def ra_strides(arr, window):
    ''' Running average using as_strided'''
    n = arr.shape[0] - window + 1
    arr_strided = as_strided(arr, shape=[n, window], strides=2*arr.strides)
    return arr_strided.mean(axis=1)

def ra_add(arr, window):
    ''' Running average using add.reduceat'''
    n = arr.shape[0] - window + 1
    indices = np.array([0, window]*n) + np.repeat(np.arange(n), 2)
    arr = np.append(arr, 0)
    return np.add.reduceat(arr, indices )[::2]/window

使用的函数:as_strided, add.reduceat

或用于python计算的模块

在我在Tradewave.net的测试中,TA-lib总是赢:

import talib as ta
import numpy as np
import pandas as pd
import scipy
from scipy import signal
import time as t

PAIR = info.primary_pair
PERIOD = 30

def initialize():
    storage.reset()
    storage.elapsed = storage.get('elapsed', [0,0,0,0,0,0])

def cumsum_sma(array, period):
    ret = np.cumsum(array, dtype=float)
    ret[period:] = ret[period:] - ret[:-period]
    return ret[period - 1:] / period

def pandas_sma(array, period):
    return pd.rolling_mean(array, period)

def api_sma(array, period):
    # this method is native to Tradewave and does NOT return an array
    return (data[PAIR].ma(PERIOD))

def talib_sma(array, period):
    return ta.MA(array, period)

def convolve_sma(array, period):
    return np.convolve(array, np.ones((period,))/period, mode='valid')

def fftconvolve_sma(array, period):    
    return scipy.signal.fftconvolve(
        array, np.ones((period,))/period, mode='valid')    

def tick():

    close = data[PAIR].warmup_period('close')

    t1 = t.time()
    sma_api = api_sma(close, PERIOD)
    t2 = t.time()
    sma_cumsum = cumsum_sma(close, PERIOD)
    t3 = t.time()
    sma_pandas = pandas_sma(close, PERIOD)
    t4 = t.time()
    sma_talib = talib_sma(close, PERIOD)
    t5 = t.time()
    sma_convolve = convolve_sma(close, PERIOD)
    t6 = t.time()
    sma_fftconvolve = fftconvolve_sma(close, PERIOD)
    t7 = t.time()

    storage.elapsed[-1] = storage.elapsed[-1] + t2-t1
    storage.elapsed[-2] = storage.elapsed[-2] + t3-t2
    storage.elapsed[-3] = storage.elapsed[-3] + t4-t3
    storage.elapsed[-4] = storage.elapsed[-4] + t5-t4
    storage.elapsed[-5] = storage.elapsed[-5] + t6-t5    
    storage.elapsed[-6] = storage.elapsed[-6] + t7-t6        

    plot('sma_api', sma_api)  
    plot('sma_cumsum', sma_cumsum[-5])
    plot('sma_pandas', sma_pandas[-10])
    plot('sma_talib', sma_talib[-15])
    plot('sma_convolve', sma_convolve[-20])    
    plot('sma_fftconvolve', sma_fftconvolve[-25])

def stop():

    log('ticks....: %s' % info.max_ticks)

    log('api......: %.5f' % storage.elapsed[-1])
    log('cumsum...: %.5f' % storage.elapsed[-2])
    log('pandas...: %.5f' % storage.elapsed[-3])
    log('talib....: %.5f' % storage.elapsed[-4])
    log('convolve.: %.5f' % storage.elapsed[-5])    
    log('fft......: %.5f' % storage.elapsed[-6])

结果:

[2015-01-31 23:00:00] ticks....: 744
[2015-01-31 23:00:00] api......: 0.16445
[2015-01-31 23:00:00] cumsum...: 0.03189
[2015-01-31 23:00:00] pandas...: 0.03677
[2015-01-31 23:00:00] talib....: 0.00700  # <<< Winner!
[2015-01-31 23:00:00] convolve.: 0.04871
[2015-01-31 23:00:00] fft......: 0.22306