你可以一直使用这个，摘自微软网站。

static void Main()
{
    // Copy from the current directory, include subdirectories.
    DirectoryCopy(".", @".\temp", true);
}

private static void DirectoryCopy(string sourceDirName, string destDirName, bool copySubDirs)
{
    // Get the subdirectories for the specified directory.
    DirectoryInfo dir = new DirectoryInfo(sourceDirName);

    if (!dir.Exists)
    {
        throw new DirectoryNotFoundException(
            "Source directory does not exist or could not be found: "
            + sourceDirName);
    }

    DirectoryInfo[] dirs = dir.GetDirectories();
    // If the destination directory doesn't exist, create it.
    if (!Directory.Exists(destDirName))
    {
        Directory.CreateDirectory(destDirName);
    }

    // Get the files in the directory and copy them to the new location.
    FileInfo[] files = dir.GetFiles();
    foreach (FileInfo file in files)
    {
        string temppath = Path.Combine(destDirName, file.Name);
        file.CopyTo(temppath, false);
    }

    // If copying subdirectories, copy them and their contents to new location.
    if (copySubDirs)
    {
        foreach (DirectoryInfo subdir in dirs)
        {
            string temppath = Path.Combine(destDirName, subdir.Name);
            DirectoryCopy(subdir.FullName, temppath, copySubDirs);
        }
    }
}

递归复制文件夹而不递归，以避免堆栈溢出。

public static void CopyDirectory(string source, string target)
{
    var stack = new Stack<Folders>();
    stack.Push(new Folders(source, target));

    while (stack.Count > 0)
    {
        var folders = stack.Pop();
        Directory.CreateDirectory(folders.Target);
        foreach (var file in Directory.GetFiles(folders.Source, "*.*"))
        {
            File.Copy(file, Path.Combine(folders.Target, Path.GetFileName(file)));
        }

        foreach (var folder in Directory.GetDirectories(folders.Source))
        {
            stack.Push(new Folders(folder, Path.Combine(folders.Target, Path.GetFileName(folder))));
        }
    }
}

public class Folders
{
    public string Source { get; private set; }
    public string Target { get; private set; }

    public Folders(string source, string target)
    {
        Source = source;
        Target = target;
    }
}

使用这个类。

public static class Extensions
{
    public static void CopyTo(this DirectoryInfo source, DirectoryInfo target, bool overwiteFiles = true)
    {
        if (!source.Exists) return;
        if (!target.Exists) target.Create();

        Parallel.ForEach(source.GetDirectories(), (sourceChildDirectory) => 
            CopyTo(sourceChildDirectory, new DirectoryInfo(Path.Combine(target.FullName, sourceChildDirectory.Name))));

        foreach (var sourceFile in source.GetFiles())
            sourceFile.CopyTo(Path.Combine(target.FullName, sourceFile.Name), overwiteFiles);
    }
    public static void CopyTo(this DirectoryInfo source, string target, bool overwiteFiles = true)
    {
        CopyTo(source, new DirectoryInfo(target), overwiteFiles);
    }
}

下面的代码复制所有文件从源到目标给定的模式在相同的文件夹结构:

public static void Copy()
        {
            string sourceDir = @"C:\test\source\";
            string destination = @"C:\test\destination\";

            string[] textFiles = Directory.GetFiles(sourceDir, "*.txt", SearchOption.AllDirectories);

            foreach (string textFile in textFiles)
            {
                string fileName = textFile.Substring(sourceDir.Length);
                string directoryPath = Path.Combine(destination, Path.GetDirectoryName(fileName));
                if (!Directory.Exists(directoryPath))
                    Directory.CreateDirectory(directoryPath);

                File.Copy(textFile, Path.Combine(directoryPath, Path.GetFileName(textFile)), true);
            }
        }

我的解决方案基本上是对@Termininja的答案的修改，但我增强了一点，它似乎比公认的答案快5倍以上。

public static void CopyEntireDirectory(string path, string newPath)
{
    Parallel.ForEach(Directory.GetFileSystemEntries(path, "*", SearchOption.AllDirectories)
    ,(fileName) =>
    {
        string output = Regex.Replace(fileName, "^" + Regex.Escape(path), newPath);
        if (File.Exists(fileName))
        {
            Directory.CreateDirectory(Path.GetDirectoryName(output));
            File.Copy(fileName, output, true);
        }
        else
            Directory.CreateDirectory(output);
    });
}

编辑:将@Ahmed Sabry修改为完全并行foreach确实会产生更好的结果，但是代码使用递归函数，在某些情况下并不理想。

public static void CopyEntireDirectory(DirectoryInfo source, DirectoryInfo target, bool overwiteFiles = true)
{
    if (!source.Exists) return;
    if (!target.Exists) target.Create();

    Parallel.ForEach(source.GetDirectories(), (sourceChildDirectory) =>
        CopyEntireDirectory(sourceChildDirectory, new DirectoryInfo(Path.Combine(target.FullName, sourceChildDirectory.Name))));

    Parallel.ForEach(source.GetFiles(), sourceFile =>
        sourceFile.CopyTo(Path.Combine(target.FullName, sourceFile.Name), overwiteFiles));
}

public static class Extensions
{
    public static void Copy(this DirectoryInfo self, DirectoryInfo destination, bool recursively)
    {
        foreach (var file in self.GetFiles())
        {
            file.CopyTo(Path.Combine(destination.FullName, file.Name));
        }

        if (recursively)
        {
            foreach (var directory in self.GetDirectories())
            {
                directory.Copy(destination.CreateSubdirectory(directory.Name), recursively);
            }
        }
    }
}

使用示例:

var sourceDirectory = new DirectoryInfo(@"C:\source");
var destinationDirectory = new DirectoryInfo(@"C:\destination");

if (destinationDirectory.Exists == false)
{
    sourceDirectory.Copy(destinationDirectory, recursively: true);
}