如何在numpy数组中找到最近的值?例子:
np.find_nearest(array, value)
如何在numpy数组中找到最近的值?例子:
np.find_nearest(array, value)
当前回答
对于2d数组,要确定最近元素的i, j位置:
import numpy as np
def find_nearest(a, a0):
idx = (np.abs(a - a0)).argmin()
w = a.shape[1]
i = idx // w
j = idx - i * w
return a[i,j], i, j
其他回答
稍微修改一下,上面的答案适用于任意维度的数组(1d, 2d, 3d,…):
def find_nearest(a, a0):
"Element in nd array `a` closest to the scalar value `a0`"
idx = np.abs(a - a0).argmin()
return a.flat[idx]
或者,写成一行:
a.flat[np.abs(a - a0).argmin()]
下面是一个处理非标量“values”数组的版本:
import numpy as np
def find_nearest(array, values):
indices = np.abs(np.subtract.outer(array, values)).argmin(0)
return array[indices]
如果输入是标量,则返回数字类型(例如int, float)的版本:
def find_nearest(array, values):
values = np.atleast_1d(values)
indices = np.abs(np.subtract.outer(array, values)).argmin(0)
out = array[indices]
return out if len(out) > 1 else out[0]
对于2d数组,要确定最近元素的i, j位置:
import numpy as np
def find_nearest(a, a0):
idx = (np.abs(a - a0)).argmin()
w = a.shape[1]
i = idx // w
j = idx - i * w
return a[i,j], i, j
对于那些搜索多个最接近的,修改接受的答案:
import numpy as np
def find_nearest(array, value, k):
array = np.asarray(array)
idx = np.argsort(abs(array - value))[:k]
return array[idx]
看到的: https://stackoverflow.com/a/66937734/11671779
这个函数使用numpy searchsorted处理任意数量的查询,因此在对输入数组进行排序之后,它的速度也一样快。 它可以在2d, 3d的规则网格上工作…:
#!/usr/bin/env python3
# keywords: nearest-neighbor regular-grid python numpy searchsorted Voronoi
import numpy as np
#...............................................................................
class Near_rgrid( object ):
""" nearest neighbors on a Manhattan aka regular grid
1d:
near = Near_rgrid( x: sorted 1d array )
nearix = near.query( q: 1d ) -> indices of the points x_i nearest each q_i
x[nearix[0]] is the nearest to q[0]
x[nearix[1]] is the nearest to q[1] ...
nearpoints = x[nearix] is near q
If A is an array of e.g. colors at x[0] x[1] ...,
A[nearix] are the values near q[0] q[1] ...
Query points < x[0] snap to x[0], similarly > x[-1].
2d: on a Manhattan aka regular grid,
streets running east-west at y_i, avenues north-south at x_j,
near = Near_rgrid( y, x: sorted 1d arrays, e.g. latitide longitude )
I, J = near.query( q: nq × 2 array, columns qy qx )
-> nq × 2 indices of the gridpoints y_i x_j nearest each query point
gridpoints = np.column_stack(( y[I], x[J] )) # e.g. street corners
diff = gridpoints - querypoints
distances = norm( diff, axis=1, ord= )
Values at an array A definded at the gridpoints y_i x_j nearest q: A[I,J]
3d: Near_rgrid( z, y, x: 1d axis arrays ) .query( q: nq × 3 array )
See Howitworks below, and the plot Voronoi-random-regular-grid.
"""
def __init__( self, *axes: "1d arrays" ):
axarrays = []
for ax in axes:
axarray = np.asarray( ax ).squeeze()
assert axarray.ndim == 1, "each axis should be 1d, not %s " % (
str( axarray.shape ))
axarrays += [axarray]
self.midpoints = [_midpoints( ax ) for ax in axarrays]
self.axes = axarrays
self.ndim = len(axes)
def query( self, queries: "nq × dim points" ) -> "nq × dim indices":
""" -> the indices of the nearest points in the grid """
queries = np.asarray( queries ).squeeze() # or list x y z ?
if self.ndim == 1:
assert queries.ndim <= 1, queries.shape
return np.searchsorted( self.midpoints[0], queries ) # scalar, 0d ?
queries = np.atleast_2d( queries )
assert queries.shape[1] == self.ndim, [
queries.shape, self.ndim]
return [np.searchsorted( mid, q ) # parallel: k axes, k processors
for mid, q in zip( self.midpoints, queries.T )]
def snaptogrid( self, queries: "nq × dim points" ):
""" -> the nearest points in the grid, 2d [[y_j x_i] ...] """
ix = self.query( queries )
if self.ndim == 1:
return self.axes[0][ix]
else:
axix = [ax[j] for ax, j in zip( self.axes, ix )]
return np.array( axix )
def _midpoints( points: "array-like 1d, *must be sorted*" ) -> "1d":
points = np.asarray( points ).squeeze()
assert points.ndim == 1, points.shape
diffs = np.diff( points )
assert np.nanmin( diffs ) > 0, "the input array must be sorted, not %s " % (
points.round( 2 ))
return (points[:-1] + points[1:]) / 2 # floats
#...............................................................................
Howitworks = \
"""
How Near_rgrid works in 1d:
Consider the midpoints halfway between fenceposts | | |
The interval [left midpoint .. | .. right midpoint] is what's nearest each post --
| | | | points
| . | . | . | midpoints
^^^^^^ . nearest points[1]
^^^^^^^^^^^^^^^ nearest points[2] etc.
2d:
I, J = Near_rgrid( y, x ).query( q )
I = nearest in `x`
J = nearest in `y` independently / in parallel.
The points nearest [yi xj] in a regular grid (its Voronoi cell)
form a rectangle [left mid x .. right mid x] × [left mid y .. right mid y]
(in any norm ?)
See the plot Voronoi-random-regular-grid.
Notes
-----
If a query point is exactly halfway between two data points,
e.g. on a grid of ints, the lines (x + 1/2) U (y + 1/2),
which "nearest" you get is implementation-dependent, unpredictable.
"""
Murky = \
""" NaNs in points, in queries ?
"""
__version__ = "2021-10-25 oct denis-bz-py"