我正在寻找一个函数,它将两个列表作为输入,并返回Pearson相关性,以及相关性的重要性。


当前回答

您可能想知道如何在寻找特定方向的相关性(负相关或正相关)的上下文中解释您的概率。这是我写的一个函数。它甚至可能是正确的!

这是基于我从http://www.vassarstats.net/rsig.html和http://en.wikipedia.org/wiki/Student%27s_t_distribution上收集到的信息,感谢这里发布的其他答案。

# Given (possibly random) variables, X and Y, and a correlation direction,
# returns:
#  (r, p),
# where r is the Pearson correlation coefficient, and p is the probability
# that there is no correlation in the given direction.
#
# direction:
#  if positive, p is the probability that there is no positive correlation in
#    the population sampled by X and Y
#  if negative, p is the probability that there is no negative correlation
#  if 0, p is the probability that there is no correlation in either direction
def probabilityNotCorrelated(X, Y, direction=0):
    x = len(X)
    if x != len(Y):
        raise ValueError("variables not same len: " + str(x) + ", and " + \
                         str(len(Y)))
    if x < 6:
        raise ValueError("must have at least 6 samples, but have " + str(x))
    (corr, prb_2_tail) = stats.pearsonr(X, Y)

    if not direction:
        return (corr, prb_2_tail)

    prb_1_tail = prb_2_tail / 2
    if corr * direction > 0:
        return (corr, prb_1_tail)

    return (corr, 1 - prb_1_tail)

其他回答

你可以用pandas.DataFrame这样做。相关系数:

import pandas as pd
a = [[1, 2, 3],
     [5, 6, 9],
     [5, 6, 11],
     [5, 6, 13],
     [5, 3, 13]]
df = pd.DataFrame(data=a)
df.corr()

这给了

          0         1         2
0  1.000000  0.745601  0.916579
1  0.745601  1.000000  0.544248
2  0.916579  0.544248  1.000000

下面是mkh答案的一个变体,比它运行得快得多,还有scipy.stats。皮尔逊,使用numba。

import numba

@numba.jit
def corr(data1, data2):
    M = data1.size

    sum1 = 0.
    sum2 = 0.
    for i in range(M):
        sum1 += data1[i]
        sum2 += data2[i]
    mean1 = sum1 / M
    mean2 = sum2 / M

    var_sum1 = 0.
    var_sum2 = 0.
    cross_sum = 0.
    for i in range(M):
        var_sum1 += (data1[i] - mean1) ** 2
        var_sum2 += (data2[i] - mean2) ** 2
        cross_sum += (data1[i] * data2[i])

    std1 = (var_sum1 / M) ** .5
    std2 = (var_sum2 / M) ** .5
    cross_mean = cross_sum / M

    return (cross_mean - mean1 * mean2) / (std1 * std2)

从Python 3.10开始,Pearson的相关系数(statistics.correlation)可以直接在标准库中获得:

from statistics import correlation

# a = [15, 12, 8, 8, 7, 7, 7, 6, 5, 3]
# b = [10, 25, 17, 11, 13, 17, 20, 13, 9, 15]
correlation(a, b)
# 0.1449981545806852

下面的代码是对该定义的直接解释:

import math

def average(x):
    assert len(x) > 0
    return float(sum(x)) / len(x)

def pearson_def(x, y):
    assert len(x) == len(y)
    n = len(x)
    assert n > 0
    avg_x = average(x)
    avg_y = average(y)
    diffprod = 0
    xdiff2 = 0
    ydiff2 = 0
    for idx in range(n):
        xdiff = x[idx] - avg_x
        ydiff = y[idx] - avg_y
        diffprod += xdiff * ydiff
        xdiff2 += xdiff * xdiff
        ydiff2 += ydiff * ydiff

    return diffprod / math.sqrt(xdiff2 * ydiff2)

测试:

print pearson_def([1,2,3], [1,5,7])

返回

0.981980506062

这与Excel,这个计算器,SciPy(也是NumPy)一致,分别返回0.981980506和0.9819805060619657,和0.98198050606196574。

R:

> cor( c(1,2,3), c(1,5,7))
[1] 0.9819805

编辑:修正了一个由评论者指出的错误。

Pearson相关性可以用numpy的corrcoef来计算。

import numpy
numpy.corrcoef(list1, list2)[0, 1]