使用nio2 (Java 7+)，不使用外部库:

byte[] b = Files.readAllBytes(Paths.get("/path/to/file"));
byte[] hash = MessageDigest.getInstance("MD5").digest(b);

将结果与期望的校验和进行比较:

String expected = "2252290BC44BEAD16AA1BF89948472E8";
String actual = DatatypeConverter.printHexBinary(hash);
System.out.println(expected.equalsIgnoreCase(actual) ? "MATCH" : "NO MATCH");

public static String getMd5OfFile(String filePath)
{
    String returnVal = "";
    try 
    {
        InputStream   input   = new FileInputStream(filePath); 
        byte[]        buffer  = new byte[1024];
        MessageDigest md5Hash = MessageDigest.getInstance("MD5");
        int           numRead = 0;
        while (numRead != -1)
        {
            numRead = input.read(buffer);
            if (numRead > 0)
            {
                md5Hash.update(buffer, 0, numRead);
            }
        }
        input.close();

        byte [] md5Bytes = md5Hash.digest();
        for (int i=0; i < md5Bytes.length; i++)
        {
            returnVal += Integer.toString( ( md5Bytes[i] & 0xff ) + 0x100, 16).substring( 1 );
        }
    } 
    catch(Throwable t) {t.printStackTrace();}
    return returnVal.toUpperCase();
}

非常快速和干净的java方法，不依赖于外部库:

(如果你想要，只需将MD5替换为SHA-1, SHA-256, SHA-384或SHA-512)

public String calcMD5() throws Exception{
        byte[] buffer = new byte[8192];
        MessageDigest md = MessageDigest.getInstance("MD5");

        DigestInputStream dis = new DigestInputStream(new FileInputStream(new File("Path to file")), md);
        try {
            while (dis.read(buffer) != -1);
        }finally{
            dis.close();
        }

        byte[] bytes = md.digest();

        // bytesToHex-method
        char[] hexChars = new char[bytes.length * 2];
        for ( int j = 0; j < bytes.length; j++ ) {
            int v = bytes[j] & 0xFF;
            hexChars[j * 2] = hexArray[v >>> 4];
            hexChars[j * 2 + 1] = hexArray[v & 0x0F];
        }

        return new String(hexChars);
}

使用Apache Commons Codec库中的DigestUtils:

try (InputStream is = Files.newInputStream(Paths.get("file.zip"))) {
    String md5 = org.apache.commons.codec.digest.DigestUtils.md5Hex(is);
}

如果使用ANT进行构建，这非常简单。将以下内容添加到build.xml中:

<checksum file="${jarFile}" todir="${toDir}"/>

其中jarFile是要针对其生成MD5的JAR, toDir是要放置MD5文件的目录。

更多信息请点击这里。

public static void main(String[] args) throws Exception {
    MessageDigest md = MessageDigest.getInstance("MD5");
    FileInputStream fis = new FileInputStream("c:\\apache\\cxf.jar");

    byte[] dataBytes = new byte[1024];

    int nread = 0;
    while ((nread = fis.read(dataBytes)) != -1) {
        md.update(dataBytes, 0, nread);
    };
    byte[] mdbytes = md.digest();
    StringBuffer sb = new StringBuffer();
    for (int i = 0; i < mdbytes.length; i++) {
        sb.append(Integer.toString((mdbytes[i] & 0xff) + 0x100, 16).substring(1));
    }
    System.out.println("Digest(in hex format):: " + sb.toString());
}

或者你可以得到更多的信息 http://www.asjava.com/core-java/java-md5-example/