如果使用ANT进行构建，这非常简单。将以下内容添加到build.xml中:

<checksum file="${jarFile}" todir="${toDir}"/>

其中jarFile是要针对其生成MD5的JAR, toDir是要放置MD5文件的目录。

更多信息请点击这里。

public static void main(String[] args) throws Exception {
    MessageDigest md = MessageDigest.getInstance("MD5");
    FileInputStream fis = new FileInputStream("c:\\apache\\cxf.jar");

    byte[] dataBytes = new byte[1024];

    int nread = 0;
    while ((nread = fis.read(dataBytes)) != -1) {
        md.update(dataBytes, 0, nread);
    };
    byte[] mdbytes = md.digest();
    StringBuffer sb = new StringBuffer();
    for (int i = 0; i < mdbytes.length; i++) {
        sb.append(Integer.toString((mdbytes[i] & 0xff) + 0x100, 16).substring(1));
    }
    System.out.println("Digest(in hex format):: " + sb.toString());
}

或者你可以得到更多的信息 http://www.asjava.com/core-java/java-md5-example/

使用Apache Commons Codec库中的DigestUtils:

try (InputStream is = Files.newInputStream(Paths.get("file.zip"))) {
    String md5 = org.apache.commons.codec.digest.DigestUtils.md5Hex(is);
}

从其他答案中提取想法，这里有一个简单的代码，没有第三方依赖关系(或DatatypeConverter，在最新的jdk中更长)，将其生成为与md5sum工具输出兼容的十六进制字符串:

import java.io.IOException;
import java.math.BigInteger;
import java.nio.file.Files;
import java.nio.file.Paths;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
...

static String calculateMD5(String path) throws IOException
{
    try {
        MessageDigest md = MessageDigest.getInstance("MD5");
        md.update(Files.readAllBytes(Paths.get(path)));
        return String.format("%032x", new BigInteger(1, md.digest())); // hex, padded to 32 chars
    } catch (NoSuchAlgorithmException ex)
    {
        throw new RuntimeException(ex); // MD5 is always available so this should be impossible
    }
}

Guava现在提供了一个新的、一致的哈希API，它比JDK中提供的各种哈希API更友好。参见哈希的解释。对于一个文件，你可以很容易地得到MD5和，CRC32(14.0+版本)或许多其他哈希值:

HashCode md5 = Files.hash(file, Hashing.md5());
byte[] md5Bytes = md5.asBytes();
String md5Hex = md5.toString();

HashCode crc32 = Files.hash(file, Hashing.crc32());
int crc32Int = crc32.asInt();

// the Checksum API returns a long, but it's padded with 0s for 32-bit CRC
// this is the value you would get if using that API directly
long checksumResult = crc32.padToLong();

下面是一个简单的函数，它包装了Sunil的代码，以File作为参数。该函数不需要任何外部库，但需要Java 7。

import java.io.File;
import java.io.IOException;
import java.nio.file.Files;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;

import javax.xml.bind.DatatypeConverter;

public class Checksum {

    /**
     * Generates an MD5 checksum as a String.
     * @param file The file that is being checksummed.
     * @return Hex string of the checksum value.
     * @throws NoSuchAlgorithmException
     * @throws IOException
     */
    public static String generate(File file) throws NoSuchAlgorithmException,IOException {

        MessageDigest messageDigest = MessageDigest.getInstance("MD5");
        messageDigest.update(Files.readAllBytes(file.toPath()));
        byte[] hash = messageDigest.digest();

        return DatatypeConverter.printHexBinary(hash).toUpperCase();
    }

    public static void main(String argv[]) throws NoSuchAlgorithmException, IOException {
        File file = new File("/Users/foo.bar/Documents/file.jar");          
        String hex = Checksum.generate(file);
        System.out.printf("hex=%s\n", hex);            
    }


}

示例输出:

hex=B117DD0C3CBBD009AC4EF65B6D75C97B