最近我似乎和合作者分享了很多代码。他们中的许多人是新手/中级R用户,并没有意识到他们必须安装他们还没有的包。
是否有一种优雅的方式来调用installed.packages(),比较那些我正在加载和安装如果丢失?
最近我似乎和合作者分享了很多代码。他们中的许多人是新手/中级R用户,并没有意识到他们必须安装他们还没有的包。
是否有一种优雅的方式来调用installed.packages(),比较那些我正在加载和安装如果丢失?
当前回答
虽然Shane的回答很好,但对于我的一个项目,我需要自动删除输出消息、警告和安装包。我终于设法得到这个脚本:
InstalledPackage <- function(package)
{
available <- suppressMessages(suppressWarnings(sapply(package, require, quietly = TRUE, character.only = TRUE, warn.conflicts = FALSE)))
missing <- package[!available]
if (length(missing) > 0) return(FALSE)
return(TRUE)
}
CRANChoosen <- function()
{
return(getOption("repos")["CRAN"] != "@CRAN@")
}
UsePackage <- function(package, defaultCRANmirror = "http://cran.at.r-project.org")
{
if(!InstalledPackage(package))
{
if(!CRANChoosen())
{
chooseCRANmirror()
if(!CRANChoosen())
{
options(repos = c(CRAN = defaultCRANmirror))
}
}
suppressMessages(suppressWarnings(install.packages(package)))
if(!InstalledPackage(package)) return(FALSE)
}
return(TRUE)
}
Use:
libraries <- c("ReadImages", "ggplot2")
for(library in libraries)
{
if(!UsePackage(library))
{
stop("Error!", library)
}
}
其他回答
下面是我的代码:
packages <- c("dplyr", "gridBase", "gridExtra")
package_loader <- function(x){
for (i in 1:length(x)){
if (!identical((x[i], installed.packages()[x[i],1])){
install.packages(x[i], dep = TRUE)
} else {
require(x[i], character.only = TRUE)
}
}
}
package_loader(packages)
非常基本的一个。
pkgs = c("pacman","data.table")
if(length(new.pkgs <- setdiff(pkgs, rownames(installed.packages())))) install.packages(new.pkgs)
48 lapply_install_and_load <- function (package1, ...)
49 {
50 #
51 # convert arguments to vector
52 #
53 packages <- c(package1, ...)
54 #
55 # check if loaded and installed
56 #
57 loaded <- packages %in% (.packages())
58 names(loaded) <- packages
59 #
60 installed <- packages %in% rownames(installed.packages())
61 names(installed) <- packages
62 #
63 # start loop to determine if each package is installed
64 #
65 load_it <- function (p, loaded, installed)
66 {
67 if (loaded[p])
68 {
69 print(paste(p, "loaded"))
70 }
71 else
72 {
73 print(paste(p, "not loaded"))
74 if (installed[p])
75 {
76 print(paste(p, "installed"))
77 do.call("library", list(p))
78 }
79 else
80 {
81 print(paste(p, "not installed"))
82 install.packages(p)
83 do.call("library", list(p))
84 }
85 }
86 }
87 #
88 lapply(packages, load_it, loaded, installed)
89 }
今天,我偶然发现了rlang包提供的两个方便函数,即is_installed()和check_installed()。
从帮助页面(强调添加):
These functions check that packages are installed with minimal side effects. If installed, the packages will be loaded but not attached. is_installed() doesn't interact with the user. It simply returns TRUE or FALSE depending on whether the packages are installed. In interactive sessions, check_installed() asks the user whether to install missing packages. If the user accepts, the packages are installed [...]. If the session is non interactive or if the user chooses not to install the packages, the current evaluation is aborted.
interactive()
#> [1] FALSE
rlang::is_installed(c("dplyr"))
#> [1] TRUE
rlang::is_installed(c("foobarbaz"))
#> [1] FALSE
rlang::check_installed(c("dplyr"))
rlang::check_installed(c("foobarbaz"))
#> Error:
#> ! The package `foobarbaz` is required.
由reprex包在2022-03-25创建(v2.0.1)
我使用以下将检查包是否安装和依赖项是否更新,然后加载包。
p<-c('ggplot2','Rcpp')
install_package<-function(pack)
{if(!(pack %in% row.names(installed.packages())))
{
update.packages(ask=F)
install.packages(pack,dependencies=T)
}
require(pack,character.only=TRUE)
}
for(pack in p) {install_package(pack)}
completeFun <- function(data, desiredCols) {
completeVec <- complete.cases(data[, desiredCols])
return(data[completeVec, ])
}