下面是我给出的一个解决方案:

First do a complete backup of your phd directory: I don't want to be held responsible for your losing years of hard work! ;-) $ cp -r phd phd-backup Move the content of phd/code to phd/code/code, and fix the history so that it looks like it has always been there (this uses git's filter-branch command): $ cd phd/code $ git filter-branch --index-filter \ 'git ls-files -s | sed "s#\t#&code/#" | GIT_INDEX_FILE=$GIT_INDEX_FILE.new \ git update-index --index-info && mv $GIT_INDEX_FILE.new $GIT_INDEX_FILE' HEAD Same for the content of phd/figures and phd/thesis (just replace code with figures and thesis).

现在你的目录结构应该是这样的:

    phd
      |_code
      |    |_.git
      |    |_code
      |         |_(your code...)
      |_figures
      |    |_.git
      |    |_figures
      |         |_(your figures...)
      |_thesis
           |_.git
           |_thesis
                |_(your thesis...)

然后在根目录中创建一个git存储库，将所有内容都拉到其中，并删除旧的存储库: $ CD博士 $ git init $ git拉码 $ rm -rf code/code $ rm -rf代码/.git $ git拉数据-允许不相关的历史 $ rm -rf figures/数字 $ rm -rf数字/.git $ git拉论文-允许不相关的历史 $ rm -rf thesis/thesis $ rm -rf thesis/.git

最后，你现在应该得到你想要的:

    phd
      |_.git
      |_code
      |    |_(your code...)
      |_figures
      |    |_(your figures...)
      |_thesis
           |_(your thesis...)

这个过程的一个优点是，它将保留不受版本控制的文件和目录。

不过，只有一个警告:如果您的代码目录已经有一个代码子目录或文件，情况可能会非常糟糕(当然，对于图表和论文也是如此)。如果是这种情况，在执行整个过程之前，只需重命名该目录或文件:

$ cd phd/code
$ git mv code code-repository-migration
$ git commit -m "preparing the code directory for migration"

当程序完成后，添加最后一步:

$ cd phd
$ git mv code/code-repository-migration code/code
$ git commit -m "final step for code directory migration"

当然，如果代码子目录或文件没有版本控制，只需使用mv而不是git mv，忘记git的提交。

你建议的顺序

git init
git add *
git commit -a -m "import everything"

将工作，但您将丢失提交历史。

git-stitch-repo将在命令行中给出的git存储库上处理git-fast-export——all——date-order的输出，并创建一个适合于git-fast-import的流，该流将创建一个新的存储库，其中包含一个新的提交树中的所有提交，该提交树尊重所有源存储库的历史。

合并mainProject中的secondProject:

A)在第二个项目中

git fast-export --all --date-order > /tmp/secondProjectExport

B)在主项目中:

git checkout -b secondProject
git fast-import --force < /tmp/secondProjectExport

在这个分支中完成你需要做的所有繁重的转换并提交它们。

C)然后回到主分支和两个分支之间的经典合并:

git checkout master
git merge secondProject

@MiniQuark解决方案帮助了我很多，但不幸的是，它没有考虑到源存储库中的标记(至少在我的情况下)。以下是我对@ mini夸克答案的改进。

First create directory which will contain composed repo and merged repos, create directory for each merged one. $ mkdir new_phd $ mkdir new_phd/code $ mkdir new_phd/figures $ mkdir new_phd/thesis Do a pull of each repository and fetch all tags. (Presenting instructions only for code sub-directory) $ cd new_phd/code $ git init $ git pull ../../original_phd/code master $ git fetch ../../original_phd/code refs/tags/*:refs/tags/* (This is improvement to point 2 in MiniQuark answer) Move the content of new_phd/code to new_phd/code/code and add code_ prefeix before each tag $ git filter-branch --index-filter 'git ls-files -s | sed "s-\t\"*-&code/-" | GIT_INDEX_FILE=$GIT_INDEX_FILE.new git update-index --index-info && mv $GIT_INDEX_FILE.new $GIT_INDEX_FILE' --tag-name-filter 'sed "s-.*-code_&-"' HEAD After doing so there will be twice as many tags as it was before doing filter-branch. Old tags remain in repo and new tags with code_ prefix are added. $ git tag mytag1 code_mytag1 Remove old tags manually: $ ls .git/refs/tags/* | grep -v "/code_" | xargs rm Repeat point 2,3,4 for other subdirectories Now we have structure of directories as in @MiniQuark anwser point 3. Do as in point 4 of MiniQuark anwser, but after doing a pull and before removing .git dir, fetch tags: $ git fetch catalog refs/tags/*:refs/tags/* Continue..

这是另一个解。希望它能帮助别人，它帮助了我:)

这个bash脚本可以解决sed制表符问题(例如在MacOS上)和丢失文件的问题。

export SUBREPO="subrepo"; # <= your subrepository name here
export TABULATOR=`printf '\t'`;
FILTER='git ls-files -s | sed "s#${TABULATOR}#&${SUBREPO}/#" |
  GIT_INDEX_FILE=$GIT_INDEX_FILE.new \
  git update-index --index-info &&
  if [ -f "$GIT_INDEX_FILE.new" ]; then mv $GIT_INDEX_FILE.new $GIT_INDEX_FILE; else echo "git filter skipped missing file: $GIT_INXEX_FILE.new"; fi'

git filter-branch --index-filter "$FILTER" HEAD

这是迷你夸克，马里乌斯-布图克和瑞恩的哨子的组合。为他们干杯!